CUBIC blog<\/p>\n
The CUBE<\/p>\n
Collaborators<\/p>\n
MRC\/UCT Medical Imaging Research Unit<\/p>\n
Cross-University Brain & Behaviour Initiative<\/p>\n
MRC Unit for Anxiety and Stress Disorders<\/p>\n
University of Stellenbosch Biomedical Engineering Research Group<\/p>\n
Centre for High Performance Computing (CHPC)<\/p>\n
iThemba Laboratory for Accelerator Based Sciences<\/p>\n
Ethics
\nUniversity of Stellenbosch Research Ethics<\/p>\n
University of Cape Town Research Ethics<\/p>\n
MRI image\/data processing software
\nFBIRN – Biomedical Informatics Research Network. Contains an extensive list of software tools.
\nFreesurfer – Powerful tools for grey matter volume analysis and visualisation on an unfolded brain surface. Running on the computer cluster at the CHPC.
\nFSL – Oxford University’s comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. Running on the computer cluster at the CHPC.
\nBrainVoyager – User-friendly fMRI and DTI analysis package.
\nCamino – Open source Java DTI analysis package
\nDTI Studio – DTI analysis tool developed at John’s Hopkins University.
\nTORTOISEDTI – DTI analysis package developed by NIH Pediatric Neuroimaging. The usual tools plus resampling and re-orientation to a common space.
\nImageJ – Image processing and analysis in Java
\njMRUI – Magnetic Resonance User Interface. Spectroscopy processing.
\nLCModel – Automatic quantification of in vivo proton MR spectra.
\nMATLAB
\nMRIcro – Freeware 3D MRI image viewing and processing
\nMRIcron – Updated version of MRIcro with less basic image processing but including new features such as reslicing and rendering.
\nMRIconvert – Excellent tool for converting Dicom images to a variety of formats. Extracts DTI gradient tables.
\nSPM – University College London MATLAB package for implementing statistical parametric mapping for neuroimaging data.
\nTrackvis – Athinoula A. Martinos Center for Biomedical Imaging. Rapid DTI processing and visualisation.
\nBrainLab – Commercial tool for stereotactic surgical planning. Seamlessly integrates fMRI, DTI and structural MRI.<\/p>\n
Journals
\nAmerican Journal of Neuroradiology
\nAmerican Journal of Roentgenology – AJR
\nApplied Magnetic Resonance
\nClinical Radiology
\nConcepts in Magnetic Resonance
\nIEEE Transactions on Medical Imaging
\nJournal of Magnetic Resonance
\nJournal of Magnetic Resonance Imaging
\nMedical Image Analysis
\nMedical Physics
\nMagnetic Resonance Imaging
\nMagnetic Resonance in Medicine
\nNMR in Biomedicine
\nMagnetic Resonance Materials in Physics, Biology and Medicine
\nRadiology
\nRadiographics<\/p>\n
Miscellaneous
\nFBIRN – Biomedical Informatics Research Network. MRI quality assurance procedures, best practices references for multi-site studies, and more…
\nMRI safety – Dr Frank Shellock’s MRI safety page
\nDICOM – Digital Imaging and Communication in Medicine
\nNIFTI – Neuroimaging Informatics Technology Initiative<\/p>\n","protected":false},"excerpt":{"rendered":"
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